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PDB files are Protein Data Bank files used to store three-dimensional structures of molecules, primarily proteins and nucleic acids. These files allow researchers to visualize molecular shapes and interactions, which is crucial for understanding biological functions and drug design.
PDB files contain atomic coordinates, connectivity, and metadata formatted in a plain text structure with specific record types such as ATOM and HETATM. Despite its age, the format remains compatible with newer formats like mmCIF, which address some limitations of the original PDB specification.
The PDB format was first developed in the 1970s, making it one of the oldest and most enduring standards in bioinformatics. It is widely supported by molecular visualization tools, enabling scientists worldwide to share and explore complex biomolecular data easily.
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